Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z A A (pygotm.config.LightExtinctionSettings attribute) a1 (pygotm.gotm.runtime_params.RuntimeParams attribute) a2 (pygotm.gotm.runtime_params.RuntimeParams attribute) a3 (pygotm.gotm.runtime_params.RuntimeParams attribute) a5 (pygotm.gotm.runtime_params.RuntimeParams attribute) A_input (pygotm.observations.observations.ObservationsState attribute) add_offset (pygotm.config.InputSetting property) adv_center() (in module pygotm.util.adv_center) adv_center_batch() (in module pygotm.util.adv_center) adv_cu (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) adv_discr (pygotm.config.VerticalVelocitySettings attribute) adv_method (pygotm.extras.sediment.sediment.SedimentState attribute) AdvBcdw (pygotm.extras.sediment.sediment.SedimentState attribute) AdvBcup (pygotm.extras.sediment.sediment.SedimentState attribute) AdvCdw (pygotm.extras.sediment.sediment.SedimentState attribute) AdvCup (pygotm.extras.sediment.sediment.SedimentState attribute) AdvectionBatchWorkspace (class in pygotm.util.adv_center) AdvectionWorkspace (class in pygotm.util.adv_center) airp (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) airsea_albedo_method (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_const_albedo (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_fluxes() (in module pygotm.airsea.airsea_fluxes) airsea_fluxes_method (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_heat_scale_factor (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_hum_method (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_longwave_method (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_longwave_type (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_shortwave_method (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_shortwave_scale_factor (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_shortwave_type (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_sst_obs_method (pygotm.gotm.runtime_params.RuntimeParams attribute) airsea_ssuv_method (pygotm.gotm.runtime_params.RuntimeParams attribute) AirSeaDriverState (class in pygotm.airsea.airsea) AirSeaState (class in pygotm.airsea.airsea_variables) airt (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) albedo (pygotm.gotm.runtime_output.RuntimeOutput attribute) albedo_cogley() (in module pygotm.airsea.albedo_water) albedo_feedback (pygotm.fabm.config.FABMConfig attribute) albedo_ice (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) albedo_payne() (in module pygotm.airsea.albedo_water) albedo_water() (in module pygotm.airsea.albedo_water) allocate_fabm_state() (in module pygotm.fabm.state) allocate_runtime_forcing() (in module pygotm.gotm.runtime_forcing) allocate_runtime_output() (in module pygotm.gotm.runtime_output) allocate_runtime_state() (in module pygotm.gotm.runtime_state) allocate_runtime_work() (in module pygotm.gotm.runtime_work) alpha (pygotm.extras.seagrass.seagrass.SeagrassState attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) alpha0 (pygotm.gotm.runtime_params.RuntimeParams attribute) AlphaMNBWorkspace (class in pygotm.turbulence.alpha_mnb) amp_1 (pygotm.config.TidalConstituentSettings attribute) (pygotm.observations.observations.ObservationsState attribute) amp_2 (pygotm.config.TidalConstituentSettings attribute) (pygotm.observations.observations.ObservationsState attribute) AmpMu (pygotm.observations.observations.ObservationsState attribute) AmpMv (pygotm.observations.observations.ObservationsState attribute) AmpSu (pygotm.observations.observations.ObservationsState attribute) AmpSv (pygotm.observations.observations.ObservationsState attribute) an (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.cmue_c.CmueCWorkspace attribute) (pygotm.turbulence.cmue_d.CmueDWorkspace attribute) analytical_profile() (in module pygotm.observations.analytical_profile) append_input() (in module pygotm.fabm.gotm_fabm_input) apply_fabm_dependencies() (in module pygotm.fabm.coupling) as_ (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.cmue_c.CmueCWorkspace attribute) (pygotm.turbulence.cmue_d.CmueDWorkspace attribute) at (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) at1 (pygotm.gotm.runtime_params.RuntimeParams attribute) at2 (pygotm.gotm.runtime_params.RuntimeParams attribute) at3 (pygotm.gotm.runtime_params.RuntimeParams attribute) at5 (pygotm.gotm.runtime_params.RuntimeParams attribute) au (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) av (pygotm.gotm.runtime_state.RuntimeState attribute) avh (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) avmolS (pygotm.gotm.runtime_params.RuntimeParams attribute) avmolT (pygotm.gotm.runtime_params.RuntimeParams attribute) avmolu (pygotm.gotm.runtime_params.RuntimeParams attribute) aw (pygotm.gotm.runtime_state.RuntimeState attribute) B B (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) b_obs_NN (pygotm.observations.observations.ObservationsState attribute) b_obs_sbf (pygotm.observations.observations.ObservationsState attribute) b_obs_surf (pygotm.observations.observations.ObservationsState attribute) background_diffusivity (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) background_viscosity (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) basal_freezing_temperature() (in module pygotm.icethm.models.basal_melt) BASAL_MELT (pygotm.icethm.params.IceModelEnum attribute) benchmark_cases() (in module pygotm.execution.benchmark) benchmark_compiled_case() (in module pygotm.execution.benchmark) BenchmarkResult (class in pygotm.execution.benchmark) BenchmarkTimings (class in pygotm.execution.benchmark) beta (pygotm.gotm.runtime_state.RuntimeState attribute) beta0 (pygotm.gotm.runtime_params.RuntimeParams attribute) bioshade (pygotm.fabm.gotm_fabm.FabmState attribute) (pygotm.fabm.state.FABMStateBuffer attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) bottom (pygotm.config.GotmSettings attribute) bottom_ice_energy (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) bottom_layer() (in module pygotm.cvmix.gotm_cvmix) bu (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) build_runtime() (in module pygotm.gotm.runtime_builder) build_runtime_forcing() (in module pygotm.gotm.runtime_builder) build_runtime_forcing_from_run() (in module pygotm.gotm.runtime_builder) build_runtime_from_run() (in module pygotm.gotm.runtime_builder) build_runtime_output() (in module pygotm.gotm.runtime_builder) build_runtime_params() (in module pygotm.gotm.runtime_builder) build_runtime_state() (in module pygotm.gotm.runtime_builder) build_runtime_work() (in module pygotm.gotm.runtime_builder) buoy (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) C C (pygotm.extras.sediment.sediment.SedimentState attribute) calc_bottom_stress (pygotm.gotm.runtime_params.RuntimeParams attribute) calculate_conserved_quantities() (in module pygotm.fabm.gotm_fabm) calculate_derived_input() (in module pygotm.fabm.gotm_fabm) calculated_at_worst (pygotm.validation.compare.VarResult attribute) calendar_date() (in module pygotm.util.time) calendar_date_interface() (in module pygotm.fabm.gotm_fabm) canonical_ice_model() (in module pygotm.icethm.params) case_name (pygotm.execution.benchmark.BenchmarkResult attribute) cc (pygotm.fabm.gotm_fabm.FabmState attribute) cc1 (pygotm.gotm.runtime_params.RuntimeParams attribute) cde (pygotm.gotm.runtime_params.RuntimeParams attribute) ce1 (pygotm.gotm.runtime_params.RuntimeParams attribute) ce2 (pygotm.gotm.runtime_params.RuntimeParams attribute) ce3minus (pygotm.gotm.runtime_params.RuntimeParams attribute) ce3plus (pygotm.gotm.runtime_params.RuntimeParams attribute) ce4 (pygotm.gotm.runtime_params.RuntimeParams attribute) center_depths_single() (in module pygotm.fabm.gotm_fabm) cex (pygotm.gotm.runtime_params.RuntimeParams attribute) charnock (pygotm.gotm.runtime_params.RuntimeParams attribute) charnock_val (pygotm.gotm.runtime_params.RuntimeParams attribute) check_restart_time() (in module pygotm.input.input_netcdf) chunk_size (pygotm.config.FABMConf attribute) clamp01() (in module pygotm.icethm._util) clean_adv_center() (in module pygotm.util.adv_center) clean_airsea() (in module pygotm.airsea.airsea) clean_cvmix() (in module pygotm.cvmix.gotm_cvmix) clean_density() (in module pygotm.util.density) clean_gotm_fabm() (in module pygotm.fabm.gotm_fabm) clean_observations() (in module pygotm.observations.observations) clean_stokes_drift() (in module pygotm.stokes_drift) clean_tridiagonal() (in module pygotm.util.tridiagonal) close() (pygotm.input.input.InputManager method) close_input() (in module pygotm.input.input) close_restart() (in module pygotm.input.input_netcdf) cloud (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) cm0 (pygotm.gotm.runtime_params.RuntimeParams attribute) cmsf (pygotm.gotm.runtime_params.RuntimeParams attribute) cmue1 (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.cmue_c.CmueCWorkspace attribute) (pygotm.turbulence.cmue_d.CmueDWorkspace attribute) cmue2 (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.cmue_c.CmueCWorkspace attribute) (pygotm.turbulence.cmue_d.CmueDWorkspace attribute) cmue3 (pygotm.gotm.runtime_state.RuntimeState attribute) CmueCWorkspace (class in pygotm.turbulence.cmue_c) CmueDWorkspace (class in pygotm.turbulence.cmue_d) cnpar (pygotm.config.TimeSettings attribute) (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) Cobs (pygotm.extras.sediment.sediment.SedimentState attribute) coerce_config() (in module pygotm.config) color (pygotm.validation.compare.VarResult attribute) column (pygotm.config.InputSetting attribute) compare_nc() (in module pygotm.validation.compare) compiled_function (pygotm.execution.benchmark.BenchmarkResult attribute) compiled_integration_s (pygotm.execution.benchmark.BenchmarkTimings attribute) (pygotm.gotm.runtime_builder.RuntimePhaseTimings attribute) compute_diff_t_up_from_ice() (in module pygotm.icethm.driver) config_path (pygotm.fabm.config.FABMConfig attribute) configure_gotm_fabm() (in module pygotm.fabm.gotm_fabm) configure_gotm_fabm_input() (in module pygotm.fabm.gotm_fabm_input) const_NNS() (in module pygotm.observations.const_nns) const_NNT() (in module pygotm.observations.const_nnt) constant_value (pygotm.config.InputSetting attribute) convection_basedOnBVF (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) convection_diffusivity (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) convection_triggerBVF (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) convection_viscosity (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) convert_fluxes() (in module pygotm.util.convert_fluxes) copy_back_s (pygotm.execution.benchmark.BenchmarkTimings attribute) (pygotm.gotm.runtime_builder.RuntimePhaseTimings attribute) copy_bioshade_feedback() (in module pygotm.fabm.coupling) cori (pygotm.gotm.runtime_params.RuntimeParams attribute) coriolis() (in module pygotm.meanflow.coriolis) cp (pygotm.gotm.runtime_params.RuntimeParams attribute) ct1 (pygotm.gotm.runtime_params.RuntimeParams attribute) ctt (pygotm.gotm.runtime_params.RuntimeParams attribute) cu (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) cvmix_g (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) cvmix_gorho0 (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) cvmix_rho0 (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) CVMixState (class in pygotm.cvmix) (class in pygotm.cvmix.gotm_cvmix) cw (pygotm.gotm.runtime_params.RuntimeParams attribute) cw1 (pygotm.gotm.runtime_params.RuntimeParams attribute) cw2 (pygotm.gotm.runtime_params.RuntimeParams attribute) cw3minus (pygotm.gotm.runtime_params.RuntimeParams attribute) cw3plus (pygotm.gotm.runtime_params.RuntimeParams attribute) cw4 (pygotm.gotm.runtime_params.RuntimeParams attribute) cwx (pygotm.gotm.runtime_params.RuntimeParams attribute) D d_norm (pygotm.validation.compare.VarResult attribute) d_raw (pygotm.validation.compare.VarResult attribute) data (pygotm.fabm.gotm_fabm.FabmObservation attribute) (pygotm.input.input.ProfileInput attribute) dd (pygotm.fabm.gotm_fabm.FabmState attribute) ddl (pygotm.config.GridSettings attribute) ddu (pygotm.config.GridSettings attribute) declare_fabm_output() (pygotm.gotm.runtime_output.RuntimeOutput method) density_method (pygotm.gotm.runtime_params.RuntimeParams attribute) DensityState (class in pygotm.util.density) depth (pygotm.config.LocationSettings attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) diagnostic() (pygotm.fabm.engine.FABMEngine method) diagnostics (pygotm.fabm.gotm_fabm.FabmState attribute) (pygotm.fabm.state.FABMStateBuffer attribute) diagnostics() (pygotm.fabm.coupling.FABMDependencyEngine method) (pygotm.fabm.engine.FABMEngine method) diff_center() (in module pygotm.util.diff_center) diff_center_batch() (in module pygotm.util.diff_center) diff_face() (in module pygotm.util.diff_face) diff_face_batch() (in module pygotm.util.diff_face) DiffBcdw (pygotm.extras.sediment.sediment.SedimentState attribute) DiffBcup (pygotm.extras.sediment.sediment.SedimentState attribute) DiffCdw (pygotm.extras.sediment.sediment.SedimentState attribute) DiffCup (pygotm.extras.sediment.sediment.SedimentState attribute) directory (pygotm.validation.reference.ValidationCase attribute) discover_reference_cases() (in module pygotm.validation.reference) DissipationEquationWorkspace (class in pygotm.turbulence.dissipationeq) do_airsea() (in module pygotm.airsea.airsea) do_cvmix() (in module pygotm.cvmix.gotm_cvmix) do_density() (in module pygotm.util.density) do_gotm_fabm() (in module pygotm.fabm.gotm_fabm) do_input() (in module pygotm.input.input) (pygotm.input.input.InputManager method) do_repair_state() (in module pygotm.fabm.gotm_fabm) do_seagrass() (in module pygotm.extras.seagrass.seagrass) do_sediment() (in module pygotm.extras.sediment.sediment) do_stokes_drift() (in module pygotm.stokes_drift) document (pygotm.config.GotmConfig attribute) dpdx (pygotm.config.ExtPressureSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) dpdx_input (pygotm.observations.observations.ObservationsState attribute) dpdy (pygotm.config.ExtPressureSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) dpdy_input (pygotm.observations.observations.ObservationsState attribute) drag (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) ds (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.stokes_drift.StokesDriftState attribute) ds_input (pygotm.stokes_drift.StokesDriftState attribute) ds_method (pygotm.stokes_drift.StokesDriftState attribute) dsdx (pygotm.config.GradientCollectionSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) dsdx_input (pygotm.observations.observations.ObservationsState attribute) dsdy (pygotm.config.GradientCollectionSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) dsdy_input (pygotm.observations.observations.ObservationsState attribute) dt (pygotm.config.TimeSettings attribute) (pygotm.fabm.gotm_fabm.FabmState attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) dtdx (pygotm.config.GradientCollectionSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) dtdx_input (pygotm.observations.observations.ObservationsState attribute) dtdy (pygotm.config.GradientCollectionSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) dtdy_input (pygotm.observations.observations.ObservationsState attribute) du (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) dusdz (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.stokes_drift.StokesDriftState attribute) dusdz_input (pygotm.stokes_drift.StokesDriftState attribute) dusdz_method (pygotm.stokes_drift.StokesDriftState attribute) dvsdz (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.stokes_drift.StokesDriftState attribute) dvsdz_input (pygotm.stokes_drift.StokesDriftState attribute) dvsdz_method (pygotm.stokes_drift.StokesDriftState attribute) dzetadx (pygotm.gotm.runtime_params.RuntimeParams attribute) dzetady (pygotm.gotm.runtime_params.RuntimeParams attribute) E ea (pygotm.gotm.runtime_output.RuntimeOutput attribute) EFactor_LWF16 (pygotm.stokes_drift.StokesDriftState attribute) EFactor_RWH16 (pygotm.stokes_drift.StokesDriftState attribute) Ekin (pygotm.gotm.runtime_output.RuntimeOutput attribute) emp_1() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) emp_2() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) enabled (pygotm.gotm.runtime_output.RuntimeOutput attribute) end_seagrass() (in module pygotm.extras.seagrass.seagrass) end_sediment() (in module pygotm.extras.sediment.sediment) environment (pygotm.fabm.gotm_fabm.FabmState attribute) Epot (pygotm.gotm.runtime_output.RuntimeOutput attribute) eps (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.epsbalgebraic.EpsBAlgebraicWorkspace attribute) (pygotm.turbulence.kbalgebraic.KBAlgebraicWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) eps_min (pygotm.gotm.runtime_params.RuntimeParams attribute) epsb (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.epsbalgebraic.EpsBAlgebraicWorkspace attribute) epsb_method (pygotm.gotm.runtime_params.RuntimeParams attribute) epsb_min (pygotm.gotm.runtime_params.RuntimeParams attribute) EpsBAlgebraicWorkspace (class in pygotm.turbulence.epsbalgebraic) epsprof (pygotm.config.ObservationTurbulenceSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) epsprof_input (pygotm.observations.observations.ObservationsState attribute) equation_of_state (pygotm.config.GotmSettings attribute) error (pygotm.execution.benchmark.BenchmarkResult attribute) es (pygotm.gotm.runtime_output.RuntimeOutput attribute) Eturb (pygotm.gotm.runtime_output.RuntimeOutput attribute) euler_forward() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) evap (pygotm.gotm.runtime_output.RuntimeOutput attribute) exc (pygotm.extras.seagrass.seagrass.SeagrassState attribute) excur (pygotm.extras.seagrass.seagrass.SeagrassState attribute) ext_press_mode (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) ext_pressure (pygotm.config.Mimic3DSettings attribute) extinct_method (pygotm.observations.observations.ObservationsState attribute) ExtPressureSettings (class in pygotm.config) extra_scalars (pygotm.gotm.runtime_output.RuntimeOutput attribute) extra_z_profiles (pygotm.gotm.runtime_output.RuntimeOutput attribute) F fabm (pygotm.config.PyGotmConf attribute) fabm_attrs (pygotm.gotm.runtime_output.RuntimeOutput attribute) fabm_calc (pygotm.fabm.gotm_fabm.FabmState attribute) fabm_chunk_s (pygotm.execution.benchmark.BenchmarkTimings attribute) (pygotm.gotm.runtime_builder.RuntimePhaseTimings attribute) fabm_enabled() (in module pygotm.fabm.config) fabm_input_create() (in module pygotm.fabm.gotm_fabm_input) fabm_scalars (pygotm.gotm.runtime_output.RuntimeOutput attribute) fabm_state_variable_names() (in module pygotm.fabm.state) fabm_steps_per_s (pygotm.execution.benchmark.BenchmarkTimings attribute) fabm_z_profiles (pygotm.gotm.runtime_output.RuntimeOutput attribute) FABMConf (class in pygotm.config) FABMConfig (class in pygotm.fabm.config) FABMDependencyEngine (class in pygotm.fabm.coupling) FABMEngine (class in pygotm.fabm.engine) FabmInputState (class in pygotm.fabm.gotm_fabm_input) FabmObservation (class in pygotm.fabm.gotm_fabm) FABMOutputSpec (class in pygotm.fabm.engine) FabmState (class in pygotm.fabm.gotm_fabm) FABMStateBuffer (class in pygotm.fabm.state) fairall() (in module pygotm.airsea.fairall) fdd (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) file (pygotm.config.GridSettings attribute) (pygotm.config.InputSetting attribute) findp_bisection() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) force_build_s (pygotm.execution.benchmark.BenchmarkTimings attribute) (pygotm.gotm.runtime_builder.RuntimePhaseTimings attribute) force_final (pygotm.gotm.runtime_output.RuntimeOutput attribute) forcing (pygotm.gotm.runtime_builder.RuntimeBundle attribute) freezing_temperature() (in module pygotm.icethm._util) freezing_temperature_winton() (in module pygotm.icethm._util) freshwater_impact (pygotm.fabm.config.FABMConfig attribute) (pygotm.fabm.gotm_fabm.FabmState attribute) fric (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) friction() (in module pygotm.meanflow.friction) FrictionWorkspace (class in pygotm.meanflow.friction) from_path() (pygotm.config.GotmConfig class method) from_settings() (pygotm.config.GotmConfig class method) fsecondsofday (pygotm.util.time.GotmTime attribute) fsecs (pygotm.util.time.GotmTime attribute) G g1 (pygotm.config.LightExtinctionSettings attribute) g1_input (pygotm.observations.observations.ObservationsState attribute) g2 (pygotm.config.LightExtinctionSettings attribute) g2_input (pygotm.observations.observations.ObservationsState attribute) ga (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) galp (pygotm.gotm.runtime_params.RuntimeParams attribute) gam (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) gamb (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) gamh (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) gams (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) gamu (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) gamv (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) gen_alpha (pygotm.gotm.runtime_params.RuntimeParams attribute) gen_l (pygotm.gotm.runtime_params.RuntimeParams attribute) get_all_obs() (in module pygotm.observations.observations) get_alpha() (in module pygotm.util.density) get_beta() (in module pygotm.util.density) get_rates() (pygotm.fabm.engine.FABMEngine method) get_rho() (in module pygotm.util.density) get_vertical_movement() (pygotm.fabm.engine.FABMEngine method) gotm_driver_fatal_error() (in module pygotm.fabm.gotm_fabm) gotm_driver_log_message() (in module pygotm.fabm.gotm_fabm) gotm_fabm_create_model() (in module pygotm.fabm.gotm_fabm) GotmConfig (class in pygotm.config) GotmDriver (class in pygotm.driver) GotmSettings (class in pygotm.config) GotmTime (class in pygotm.util.time) GradientCollectionSettings (class in pygotm.config) gradients (pygotm.config.IntPressureSettings attribute) grassfile (pygotm.extras.seagrass.seagrass.SeagrassState attribute) grassfric (pygotm.extras.seagrass.seagrass.SeagrassState attribute) grassind (pygotm.extras.seagrass.seagrass.SeagrassState attribute) grassn (pygotm.extras.seagrass.seagrass.SeagrassState attribute) grassz (pygotm.extras.seagrass.seagrass.SeagrassState attribute) gravity (pygotm.gotm.runtime_params.RuntimeParams attribute) grid (pygotm.config.GotmSettings attribute) grid_method (pygotm.gotm.runtime_params.RuntimeParams attribute) gridinterpol() (in module pygotm.util.gridinterpol) GridSettings (class in pygotm.config) gs (pygotm.extras.sediment.sediment.SedimentState attribute) gsw_alpha() (in module pygotm.util.gsw) gsw_beta() (in module pygotm.util.gsw) gsw_rho() (in module pygotm.util.gsw) gsw_sa_from_sp() (in module pygotm.util.gsw) gsw_saar() (in module pygotm.util.gsw) gsw_sigma0() (in module pygotm.util.gsw) gsw_sp_from_sa() (in module pygotm.util.gsw) gsw_specvol() (in module pygotm.util.gsw) H h (pygotm.config.ExtPressureSettings attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) h0b (pygotm.gotm.runtime_params.RuntimeParams attribute) h_b (pygotm.config.ProfileRelaxationSettings attribute) h_bot (pygotm.fabm.gotm_fabm_input.InputVariable attribute) h_press (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) h_press_input (pygotm.observations.observations.ObservationsState attribute) h_r (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) h_s (pygotm.config.ProfileRelaxationSettings attribute) h_surf (pygotm.fabm.gotm_fabm_input.InputVariable attribute) has_dependency() (pygotm.fabm.coupling.FABMDependencyEngine method) (pygotm.fabm.engine.FABMEngine method) heat (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) height (pygotm.config.VerticalVelocitySettings attribute) Hfrazil (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) Hice (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) Hice_init (pygotm.icethm.params.IceParams attribute) ho (pygotm.gotm.runtime_state.RuntimeState attribute) horizontal_id (pygotm.fabm.gotm_fabm_input.InputVariable attribute) Hs (pygotm.config.WaveSettings attribute) Hs_input (pygotm.observations.observations.ObservationsState attribute) Hsnow (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) Hsnow_init (pygotm.icethm.params.IceParams attribute) hum (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) humidity() (in module pygotm.airsea.humidity) I I_0 (pygotm.gotm.runtime_output.RuntimeOutput attribute) ice3lay_resize() (in module pygotm.icethm.models.winton) ice3lay_temp() (in module pygotm.icethm.models.winton) ice_cover (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) ice_model (pygotm.gotm.runtime_params.RuntimeParams attribute) ice_optics() (in module pygotm.icethm.models.winton) IceModelEnum (class in pygotm.icethm.params) IceParams (class in pygotm.icethm.params) IceState (class in pygotm.icethm.state) idpdx (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.observations.observations.ObservationsState attribute) idpdy (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.observations.observations.ObservationsState attribute) in_time_interval() (in module pygotm.util.time) init_adv_center() (in module pygotm.util.adv_center) init_airsea() (in module pygotm.airsea.airsea) init_conc (pygotm.extras.sediment.sediment.SedimentState attribute) init_cvmix() (in module pygotm.cvmix.gotm_cvmix) init_cvmix_yaml() (in module pygotm.cvmix.gotm_cvmix) init_density() (in module pygotm.util.density) init_gotm_fabm() (in module pygotm.fabm.gotm_fabm) init_gotm_fabm_input() (in module pygotm.fabm.gotm_fabm_input) init_gotm_fabm_state() (in module pygotm.fabm.gotm_fabm) init_ice() (in module pygotm.icethm.driver) init_input() (in module pygotm.input.input) init_observations() (in module pygotm.observations.observations) init_seagrass() (in module pygotm.extras.seagrass.seagrass) init_sediment() (in module pygotm.extras.sediment.sediment) init_stokes_drift() (in module pygotm.stokes_drift) init_stokes_drift_yaml() (in module pygotm.stokes_drift) init_time() (pygotm.util.time.GotmTime method) init_tridiagonal() (in module pygotm.util.tridiagonal) init_var_gotm_fabm() (in module pygotm.fabm.gotm_fabm) initial_salinity_type (pygotm.observations.observations.ObservationsState attribute) initial_temperature_type (pygotm.observations.observations.ObservationsState attribute) initialization_s (pygotm.execution.benchmark.BenchmarkTimings attribute) initialize() (pygotm.fabm.engine.FABMEngine method) InputManager (class in pygotm.input.input) InputSetting (class in pygotm.config) InputVariable (class in pygotm.fabm.gotm_fabm_input) int_evap (pygotm.gotm.runtime_output.RuntimeOutput attribute) int_heat (pygotm.gotm.runtime_output.RuntimeOutput attribute) int_precip (pygotm.gotm.runtime_output.RuntimeOutput attribute) int_press_type (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) int_pressure (pygotm.config.Mimic3DSettings attribute) int_swr (pygotm.gotm.runtime_output.RuntimeOutput attribute) int_total (pygotm.gotm.runtime_output.RuntimeOutput attribute) integrated_fluxes() (in module pygotm.airsea.airsea) integration_s (pygotm.execution.benchmark.BenchmarkTimings attribute) (pygotm.gotm.runtime_builder.RuntimePhaseTimings attribute) interior_conv() (in module pygotm.cvmix.gotm_cvmix) interior_id (pygotm.fabm.gotm_fabm_input.InputVariable attribute) interior_nonconv() (in module pygotm.cvmix.gotm_cvmix) InternalWaveWorkspace (class in pygotm.turbulence.internal_wave) IntPressureSettings (class in pygotm.config) iter_arrays() (pygotm.gotm.runtime_work.RuntimeWork method) iter_profile_arrays() (pygotm.gotm.runtime_state.RuntimeState method) iter_profile_series() (pygotm.gotm.runtime_forcing.RuntimeForcing method) iter_scalar_arrays() (pygotm.gotm.runtime_state.RuntimeState method) iter_scalar_series() (pygotm.gotm.runtime_forcing.RuntimeForcing method) iw_alpha (pygotm.gotm.runtime_params.RuntimeParams attribute) iw_model (pygotm.gotm.runtime_params.RuntimeParams attribute) J jul1 (pygotm.util.time.GotmTime attribute) jul2 (pygotm.util.time.GotmTime attribute) julian_day() (in module pygotm.util.time) julianday (pygotm.util.time.GotmTime attribute) K k_lbc (pygotm.gotm.runtime_params.RuntimeParams attribute) k_min (pygotm.gotm.runtime_params.RuntimeParams attribute) k_ubc (pygotm.gotm.runtime_params.RuntimeParams attribute) kappa (pygotm.gotm.runtime_params.RuntimeParams attribute) kb (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.epsbalgebraic.EpsBAlgebraicWorkspace attribute) (pygotm.turbulence.kbalgebraic.KBAlgebraicWorkspace attribute) kb_method (pygotm.gotm.runtime_params.RuntimeParams attribute) kb_min (pygotm.gotm.runtime_params.RuntimeParams attribute) KBAlgebraicWorkspace (class in pygotm.turbulence.kbalgebraic) kind (pygotm.fabm.engine.FABMOutputSpec attribute) (pygotm.fabm.gotm_fabm.FabmObservation attribute) klimiw (pygotm.gotm.runtime_params.RuntimeParams attribute) kondo() (in module pygotm.airsea.kondo) L L (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) l_sour (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) La_SL (pygotm.stokes_drift.StokesDriftState attribute) La_SLP_RWH16 (pygotm.stokes_drift.StokesDriftState attribute) La_SLP_VR12 (pygotm.stokes_drift.StokesDriftState attribute) La_Turb (pygotm.stokes_drift.StokesDriftState attribute) lagrange() (in module pygotm.util.lagrange) langmuir_number() (in module pygotm.stokes_drift) latitude (pygotm.config.LocationSettings attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) lbc_type (pygotm.gotm.runtime_params.RuntimeParams attribute) LEBEDEV (pygotm.icethm.params.IceModelEnum attribute) len_scale_method (pygotm.gotm.runtime_params.RuntimeParams attribute) length_lim (pygotm.gotm.runtime_params.RuntimeParams attribute) light() (in module pygotm.fabm.gotm_fabm) light_A (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) light_extinction (pygotm.config.GotmSettings attribute) light_g1 (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) light_g2 (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) LightExtinctionSettings (class in pygotm.config) load_config() (in module pygotm.config) load_fabm_config() (in module pygotm.fabm.config) load_pygotm_conf() (in module pygotm.config) load_settings() (in module pygotm.config) location (pygotm.config.GotmSettings attribute) LocationSettings (class in pygotm.config) long_name (pygotm.fabm.engine.FABMOutputSpec attribute) longitude (pygotm.config.LocationSettings attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) longwave (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) longwave_radiation() (in module pygotm.airsea.longwave_radiation) Lsour (pygotm.extras.sediment.sediment.SedimentState attribute) M make_ice_params() (in module pygotm.icethm.params) make_ice_params_from_mapping() (in module pygotm.icethm.params) make_ice_state() (in module pygotm.icethm.state) make_runtime_params() (in module pygotm.gotm.runtime_params) materialize_document() (pygotm.config.GotmConfig method) matrix_solve() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) max (pygotm.config.VerticalVelocitySettings attribute) max_it_z0b (pygotm.gotm.runtime_params.RuntimeParams attribute) max_steps (pygotm.config.TimeSettings attribute) MaxN (pygotm.util.time.GotmTime attribute) melt_rate (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) method (pygotm.config.GridSettings attribute) (pygotm.config.InputSetting attribute) (pygotm.config.LightExtinctionSettings attribute) (pygotm.config.SalinitySettings attribute) (pygotm.config.ScalarTidalSettings attribute) (pygotm.config.TemperatureSettings attribute) (pygotm.config.TimeSettings attribute) (pygotm.extras.seagrass.seagrass.SeagrassState attribute) metric_mode (pygotm.validation.compare.VarResult attribute) Mimic3DSettings (class in pygotm.config) mimic_3d (pygotm.config.GotmSettings attribute) MinN (pygotm.util.time.GotmTime attribute) mld_bott (pygotm.gotm.runtime_output.RuntimeOutput attribute) mld_diff_k (pygotm.gotm.runtime_params.RuntimeParams attribute) mld_method (pygotm.gotm.runtime_params.RuntimeParams attribute) mld_ri_crit (pygotm.gotm.runtime_params.RuntimeParams attribute) mld_surf (pygotm.gotm.runtime_output.RuntimeOutput attribute) model (pygotm.fabm.gotm_fabm.FabmState attribute) (pygotm.icethm.params.IceParams attribute) model_config (pygotm.config.ExtPressureSettings attribute) (pygotm.config.GotmSettings attribute) (pygotm.config.GradientCollectionSettings attribute) (pygotm.config.GridSettings attribute) (pygotm.config.InputSetting attribute) (pygotm.config.IntPressureSettings attribute) (pygotm.config.LightExtinctionSettings attribute) (pygotm.config.LocationSettings attribute) (pygotm.config.Mimic3DSettings attribute) (pygotm.config.ObservationTurbulenceSettings attribute) (pygotm.config.PlumeSettings attribute) (pygotm.config.ProfileRelaxationSettings attribute) (pygotm.config.SalinitySettings attribute) (pygotm.config.ScalarTidalSettings attribute) (pygotm.config.TemperatureSettings attribute) (pygotm.config.TidalConstituentSettings attribute) (pygotm.config.TimeSettings attribute) (pygotm.config.VelocitySettings attribute) (pygotm.config.VerticalVelocitySettings attribute) (pygotm.config.WaveSettings attribute) modified_patankar() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) modified_patankar_2() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) modified_patankar_4() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) module pygotm.airsea.airsea pygotm.airsea.airsea_fluxes pygotm.airsea.airsea_variables pygotm.airsea.albedo_water pygotm.airsea.fairall pygotm.airsea.humidity pygotm.airsea.kondo pygotm.airsea.longwave_radiation pygotm.airsea.shortwave_radiation pygotm.airsea.solar_zenith_angle pygotm.config pygotm.cvmix pygotm.cvmix.gotm_cvmix pygotm.driver pygotm.execution.benchmark pygotm.extras.seagrass.seagrass pygotm.extras.sediment.sediment pygotm.fabm.config pygotm.fabm.coupling pygotm.fabm.engine pygotm.fabm.fabm_loop pygotm.fabm.gotm_fabm pygotm.fabm.gotm_fabm_input pygotm.fabm.state pygotm.gotm.runtime_builder pygotm.gotm.runtime_forcing pygotm.gotm.runtime_output pygotm.gotm.runtime_params pygotm.gotm.runtime_state pygotm.gotm.runtime_work pygotm.gotm.time_loop pygotm.icethm._util pygotm.icethm.constants pygotm.icethm.driver pygotm.icethm.models.basal_melt pygotm.icethm.models.lebedev pygotm.icethm.models.mylake pygotm.icethm.models.simple pygotm.icethm.models.winton pygotm.icethm.params pygotm.icethm.state pygotm.input pygotm.input.input pygotm.input.input_netcdf pygotm.meanflow pygotm.meanflow.coriolis pygotm.meanflow.friction pygotm.meanflow.salinity pygotm.meanflow.shear pygotm.meanflow.temperature pygotm.meanflow.uequation pygotm.meanflow.vequation pygotm.observations pygotm.observations.analytical_profile pygotm.observations.const_nns pygotm.observations.const_nnt pygotm.observations.observations pygotm.stokes_drift pygotm.stokes_drift.stokes_drift_exp pygotm.stokes_drift.stokes_drift_theory pygotm.turbulence pygotm.turbulence.alpha_mnb pygotm.turbulence.cmue_c pygotm.turbulence.cmue_d pygotm.turbulence.dissipationeq pygotm.turbulence.epsbalgebraic pygotm.turbulence.internal_wave pygotm.turbulence.kbalgebraic pygotm.turbulence.omegaeq pygotm.turbulence.production pygotm.turbulence.tkeeq pygotm.turbulence.variances pygotm.util.adv_center pygotm.util.compilation pygotm.util.convert_fluxes pygotm.util.density pygotm.util.diff_center pygotm.util.diff_face pygotm.util.gotm_version pygotm.util.gridinterpol pygotm.util.gsw pygotm.util.lagrange pygotm.util.ode_solvers pygotm.util.ode_solvers_template pygotm.util.time pygotm.util.tridiagonal pygotm.validation pygotm.validation.compare pygotm.validation.reference pygotm.validation.render_report pygotm.validation.runner my_b1 (pygotm.gotm.runtime_params.RuntimeParams attribute) my_e1 (pygotm.gotm.runtime_params.RuntimeParams attribute) my_e2 (pygotm.gotm.runtime_params.RuntimeParams attribute) my_e3 (pygotm.gotm.runtime_params.RuntimeParams attribute) my_e6 (pygotm.gotm.runtime_params.RuntimeParams attribute) my_ex (pygotm.gotm.runtime_params.RuntimeParams attribute) my_length (pygotm.gotm.runtime_params.RuntimeParams attribute) my_sl (pygotm.gotm.runtime_params.RuntimeParams attribute) my_sq (pygotm.gotm.runtime_params.RuntimeParams attribute) MYLAKE (pygotm.icethm.params.IceModelEnum attribute) N n_output (pygotm.execution.benchmark.BenchmarkResult attribute) n_steps (pygotm.execution.benchmark.BenchmarkResult attribute) name (pygotm.config.LocationSettings attribute) (pygotm.fabm.engine.FABMOutputSpec attribute) (pygotm.fabm.gotm_fabm_input.InputVariable attribute) (pygotm.validation.compare.VarResult attribute) (pygotm.validation.reference.ValidationCase attribute) ncid (pygotm.fabm.gotm_fabm_input.InputVariable attribute) nlev (pygotm.config.GridSettings attribute) (pygotm.fabm.gotm_fabm.FabmState attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.input.input.InputManager attribute) NN (pygotm.config.SalinitySettings attribute) (pygotm.config.TemperatureSettings attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.internal_wave.InternalWaveWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) NNS (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) NNT (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) NO_ICE (pygotm.icethm.params.IceModelEnum attribute) nopython_signature_count (pygotm.execution.benchmark.BenchmarkResult attribute) nout (pygotm.gotm.runtime_output.RuntimeOutput attribute) nt (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) nucl (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) nuh (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.internal_wave.InternalWaveWorkspace attribute) nuhiw (pygotm.gotm.runtime_params.RuntimeParams attribute) num (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.internal_wave.InternalWaveWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) numeric_variable_names() (in module pygotm.validation.reference) numiw (pygotm.gotm.runtime_params.RuntimeParams attribute) numshear (pygotm.gotm.runtime_params.RuntimeParams attribute) nus (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) O o2_prof_input (pygotm.observations.observations.ObservationsState attribute) observations (pygotm.fabm.gotm_fabm.FabmState attribute) ObservationsState (class in pygotm.observations.observations) ObservationTurbulenceSettings (class in pygotm.config) ocean_ice_flux (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) ocean_ice_flux_init (pygotm.icethm.params.IceParams attribute) ocean_ice_heat_flux (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) ocean_ice_salt_flux (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) ode_solver() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) offset (pygotm.config.InputSetting attribute) omega (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) OmegaEquationWorkspace (class in pygotm.turbulence.omegaeq) open_reference_dataset() (in module pygotm.validation.reference) open_restart() (in module pygotm.input.input_netcdf) open_validation_dataset() (in module pygotm.validation.reference) output (pygotm.config.GotmSettings attribute) (pygotm.gotm.runtime_builder.RuntimeBundle attribute) output_conversion_s (pygotm.execution.benchmark.BenchmarkTimings attribute) output_every (pygotm.gotm.runtime_output.RuntimeOutput attribute) output_step (pygotm.gotm.runtime_output.RuntimeOutput attribute) output_variable_specs() (pygotm.fabm.engine.FABMEngine method) outputs_to_buffers() (in module pygotm.icethm.driver) P P (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) par_from_background_single() (in module pygotm.fabm.gotm_fabm) par_with_bioext_from_attenuation_single() (in module pygotm.fabm.gotm_fabm) params (pygotm.gotm.runtime_builder.RuntimeBundle attribute) patankar() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) patankar_runge_kutta_2() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) patankar_runge_kutta_4() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) path (pygotm.config.InputSetting property) Pb (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.kbalgebraic.KBAlgebraicWorkspace attribute) peak_d_norm (pygotm.validation.compare.VarResult attribute) period_1 (pygotm.config.ExtPressureSettings attribute) (pygotm.config.ScalarTidalSettings attribute) (pygotm.config.TidalConstituentSettings attribute) (pygotm.observations.observations.ObservationsState attribute) period_2 (pygotm.config.ExtPressureSettings attribute) (pygotm.config.ScalarTidalSettings attribute) (pygotm.config.TidalConstituentSettings attribute) (pygotm.observations.observations.ObservationsState attribute) PeriodM (pygotm.observations.observations.ObservationsState attribute) PeriodS (pygotm.observations.observations.ObservationsState attribute) phase_1 (pygotm.config.TidalConstituentSettings attribute) (pygotm.observations.observations.ObservationsState attribute) phase_2 (pygotm.config.TidalConstituentSettings attribute) (pygotm.observations.observations.ObservationsState attribute) PhaseMu (pygotm.observations.observations.ObservationsState attribute) PhaseMv (pygotm.observations.observations.ObservationsState attribute) PhaseSu (pygotm.observations.observations.ObservationsState attribute) PhaseSv (pygotm.observations.observations.ObservationsState attribute) phiw (pygotm.config.WaveSettings attribute) phiw_input (pygotm.observations.observations.ObservationsState attribute) plot_html (pygotm.validation.compare.VarResult attribute) plume (pygotm.config.IntPressureSettings attribute) plume_active (pygotm.gotm.runtime_params.RuntimeParams attribute) plume_slope_x (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) plume_slope_y (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) plume_type (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) PlumeSettings (class in pygotm.config) post_init_airsea() (in module pygotm.airsea.airsea) post_init_cvmix() (in module pygotm.cvmix.gotm_cvmix) post_init_observations() (in module pygotm.observations.observations) post_init_seagrass() (in module pygotm.extras.seagrass.seagrass) post_init_stokes_drift() (in module pygotm.stokes_drift) pp (pygotm.fabm.gotm_fabm.FabmState attribute) prandtl0_fix (pygotm.gotm.runtime_params.RuntimeParams attribute) precip (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) ProductionWorkspace (class in pygotm.turbulence.production) profile_input (pygotm.fabm.gotm_fabm_input.InputVariable attribute) profile_inputs (pygotm.input.input.InputManager attribute) ProfileInput (class in pygotm.input.input) ProfileRelaxationSettings (class in pygotm.config) psi() (in module pygotm.airsea.fairall) psi_lbc (pygotm.gotm.runtime_params.RuntimeParams attribute) psi_ubc (pygotm.gotm.runtime_params.RuntimeParams attribute) PSTK (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) Px (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) pygotm.airsea.airsea module pygotm.airsea.airsea_fluxes module pygotm.airsea.airsea_variables module pygotm.airsea.albedo_water module pygotm.airsea.fairall module pygotm.airsea.humidity module pygotm.airsea.kondo module pygotm.airsea.longwave_radiation module pygotm.airsea.shortwave_radiation module pygotm.airsea.solar_zenith_angle module pygotm.config module pygotm.cvmix module pygotm.cvmix.gotm_cvmix module pygotm.driver module pygotm.execution.benchmark module pygotm.extras.seagrass.seagrass module pygotm.extras.sediment.sediment module pygotm.fabm.config module pygotm.fabm.coupling module pygotm.fabm.engine module pygotm.fabm.fabm_loop module pygotm.fabm.gotm_fabm module pygotm.fabm.gotm_fabm_input module pygotm.fabm.state module pygotm.gotm.runtime_builder module pygotm.gotm.runtime_forcing module pygotm.gotm.runtime_output module pygotm.gotm.runtime_params module pygotm.gotm.runtime_state module pygotm.gotm.runtime_work module pygotm.gotm.time_loop module pygotm.icethm._util module pygotm.icethm.constants module pygotm.icethm.driver module pygotm.icethm.models.basal_melt module pygotm.icethm.models.lebedev module pygotm.icethm.models.mylake module pygotm.icethm.models.simple module pygotm.icethm.models.winton module pygotm.icethm.params module pygotm.icethm.state module pygotm.input module pygotm.input.input module pygotm.input.input_netcdf module pygotm.meanflow module pygotm.meanflow.coriolis module pygotm.meanflow.friction module pygotm.meanflow.salinity module pygotm.meanflow.shear module pygotm.meanflow.temperature module pygotm.meanflow.uequation module pygotm.meanflow.vequation module pygotm.observations module pygotm.observations.analytical_profile module pygotm.observations.const_nns module pygotm.observations.const_nnt module pygotm.observations.observations module pygotm.stokes_drift module pygotm.stokes_drift.stokes_drift_exp module pygotm.stokes_drift.stokes_drift_theory module pygotm.turbulence module pygotm.turbulence.alpha_mnb module pygotm.turbulence.cmue_c module pygotm.turbulence.cmue_d module pygotm.turbulence.dissipationeq module pygotm.turbulence.epsbalgebraic module pygotm.turbulence.internal_wave module pygotm.turbulence.kbalgebraic module pygotm.turbulence.omegaeq module pygotm.turbulence.production module pygotm.turbulence.tkeeq module pygotm.turbulence.variances module pygotm.util.adv_center module pygotm.util.compilation module pygotm.util.convert_fluxes module pygotm.util.density module pygotm.util.diff_center module pygotm.util.diff_face module pygotm.util.gotm_version module pygotm.util.gridinterpol module pygotm.util.gsw module pygotm.util.lagrange module pygotm.util.ode_solvers module pygotm.util.ode_solvers_template module pygotm.util.time module pygotm.util.tridiagonal module pygotm.validation module pygotm.validation.compare module pygotm.validation.reference module pygotm.validation.render_report module pygotm.validation.runner module PyGotmConf (class in pygotm.config) Q q2l (pygotm.gotm.runtime_work.RuntimeWork attribute) q_sour (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) qa (pygotm.gotm.runtime_output.RuntimeOutput attribute) qe (pygotm.gotm.runtime_output.RuntimeOutput attribute) qh (pygotm.gotm.runtime_output.RuntimeOutput attribute) ql (pygotm.gotm.runtime_output.RuntimeOutput attribute) qs (pygotm.gotm.runtime_output.RuntimeOutput attribute) Qsour (pygotm.extras.sediment.sediment.SedimentState attribute) qu (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) R r (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) rad (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) rates (pygotm.fabm.state.FABMStateBuffer attribute) read_obs() (in module pygotm.input.input) read_profiles() (in module pygotm.input.input) read_restart_data() (in module pygotm.input.input_netcdf) read_time_string() (in module pygotm.util.time) reference_at_worst (pygotm.validation.compare.VarResult attribute) reference_path (pygotm.validation.reference.ValidationCase attribute) register_bulk_observation() (in module pygotm.fabm.gotm_fabm) register_field() (in module pygotm.fabm.gotm_fabm) register_horizontal_observation() (in module pygotm.fabm.gotm_fabm) register_input() (in module pygotm.input.input) register_observation() (in module pygotm.fabm.gotm_fabm) register_profile_input() (in module pygotm.input.input) (pygotm.input.input.InputManager method) register_scalar_input() (in module pygotm.input.input) (pygotm.input.input.InputManager method) register_scalar_observation() (in module pygotm.fabm.gotm_fabm) registered_fields (pygotm.fabm.gotm_fabm.FabmState attribute) relax (pygotm.config.SalinitySettings attribute) (pygotm.config.TemperatureSettings attribute) (pygotm.config.VelocitySettings attribute) relax_tau (pygotm.fabm.gotm_fabm.FabmObservation attribute) (pygotm.fabm.gotm_fabm_input.InputVariable attribute) relax_tau_1d (pygotm.fabm.gotm_fabm_input.InputVariable attribute) relax_tau_bot (pygotm.fabm.gotm_fabm_input.InputVariable attribute) relax_tau_surf (pygotm.fabm.gotm_fabm_input.InputVariable attribute) RelaxT (pygotm.extras.sediment.sediment.SedimentState attribute) repair_state (pygotm.fabm.config.FABMConfig attribute) (pygotm.fabm.gotm_fabm.FabmState attribute) require_ice_state() (in module pygotm.icethm._util) resolve_fabm_config_path() (in module pygotm.fabm.config) resolve_reference_case() (in module pygotm.validation.reference) resolved_document() (pygotm.config.GotmConfig method) resolved_settings() (pygotm.config.GotmConfig method) restart (pygotm.config.GotmSettings attribute) rho (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) rho0 (pygotm.gotm.runtime_params.RuntimeParams attribute) rho_p (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) rho_sed (pygotm.extras.sediment.sediment.SedimentState attribute) rhoa (pygotm.gotm.runtime_output.RuntimeOutput attribute) rhob (pygotm.gotm.runtime_params.RuntimeParams attribute) rhs (pygotm.fabm.gotm_fabm.FabmState attribute) rich_cr (pygotm.gotm.runtime_params.RuntimeParams attribute) Rig (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) right_hand_side_ppdd() (in module pygotm.fabm.gotm_fabm) right_hand_side_rhs() (in module pygotm.fabm.gotm_fabm) ru (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) run() (pygotm.driver.GotmDriver method) (pygotm.gotm.runtime_builder.RuntimeBundle method) run_case() (in module pygotm.validation.runner) run_compiled_time_loop() (in module pygotm.gotm.time_loop) run_fabm_chunk() (in module pygotm.fabm.fabm_loop) run_fabm_loop() (in module pygotm.fabm.fabm_loop) run_name (pygotm.validation.reference.ValidationCase property) runge_kutta_2() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) runge_kutta_4() (in module pygotm.util.ode_solvers) (in module pygotm.util.ode_solvers_template) runner (pygotm.gotm.runtime_builder.RuntimeBundle attribute) runtime_build_s (pygotm.execution.benchmark.BenchmarkTimings attribute) (pygotm.gotm.runtime_builder.RuntimePhaseTimings attribute) runtime_output_to_dataset() (in module pygotm.gotm.runtime_builder) RuntimeBundle (class in pygotm.gotm.runtime_builder) RuntimeForcing (class in pygotm.gotm.runtime_forcing) RuntimeOutput (class in pygotm.gotm.runtime_output) RuntimeParams (class in pygotm.gotm.runtime_params) RuntimePhaseTimings (class in pygotm.gotm.runtime_builder) RuntimeState (class in pygotm.gotm.runtime_state) RuntimeWork (class in pygotm.gotm.runtime_work) S S (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) S0 (pygotm.gotm.runtime_params.RuntimeParams attribute) s_1 (pygotm.observations.observations.ObservationsState attribute) s_2 (pygotm.observations.observations.ObservationsState attribute) s_adv (pygotm.config.IntPressureSettings attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) S_melt (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) s_obs_NN (pygotm.observations.observations.ObservationsState attribute) s_relax_tau (pygotm.gotm.runtime_work.RuntimeWork attribute) safe_exp() (in module pygotm.icethm._util) salinity (pygotm.config.GotmSettings attribute) salinity() (in module pygotm.meanflow.salinity) SalinitySettings (class in pygotm.config) save() (pygotm.config.GotmConfig method) save_benchmark_results() (in module pygotm.execution.benchmark) save_config() (in module pygotm.config) save_diagnostics() (in module pygotm.fabm.gotm_fabm) save_sediment() (in module pygotm.extras.sediment.sediment) save_settings() (in module pygotm.config) sbl_langmuir_method (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) scalar_id (pygotm.fabm.gotm_fabm_input.InputVariable attribute) scalar_input (pygotm.fabm.gotm_fabm_input.InputVariable attribute) scalar_inputs (pygotm.input.input.InputManager attribute) ScalarInput (class in pygotm.input.input) ScalarTidalSettings (class in pygotm.config) scale_factor (pygotm.config.InputSetting attribute) scnd_method (pygotm.gotm.runtime_params.RuntimeParams attribute) score (pygotm.validation.compare.VarResult attribute) seagrass_active (pygotm.gotm.runtime_params.RuntimeParams attribute) seagrass_alpha (pygotm.gotm.runtime_params.RuntimeParams attribute) seagrass_calc (pygotm.extras.seagrass.seagrass.SeagrassState attribute) seagrass_exc (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_excur (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_grassfric (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_grassind (pygotm.gotm.runtime_params.RuntimeParams attribute) seagrass_grassn (pygotm.gotm.runtime_params.RuntimeParams attribute) seagrass_vfric (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_xx (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_xxP (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_yy (pygotm.gotm.runtime_work.RuntimeWork attribute) seagrass_z (pygotm.gotm.runtime_work.RuntimeWork attribute) SeagrassState (class in pygotm.extras.seagrass.seagrass) secondsofday (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.util.time.GotmTime attribute) secs1 (pygotm.util.time.GotmTime attribute) secs2 (pygotm.util.time.GotmTime attribute) section (pygotm.validation.compare.VarResult attribute) sedi_calc (pygotm.extras.sediment.sediment.SedimentState attribute) sedi_dens (pygotm.extras.sediment.sediment.SedimentState attribute) sedi_eulerian (pygotm.extras.sediment.sediment.SedimentState attribute) sedi_method (pygotm.extras.sediment.sediment.SedimentState attribute) sedi_npar (pygotm.extras.sediment.sediment.SedimentState attribute) sediment_eulerian() (in module pygotm.extras.sediment.sediment) sediment_lagrangian() (in module pygotm.extras.sediment.sediment) SedimentState (class in pygotm.extras.sediment.sediment) select_time_loop() (in module pygotm.gotm.runtime_builder) set_dependency() (pygotm.fabm.coupling.FABMDependencyEngine method) (pygotm.fabm.engine.FABMEngine method) set_dependency_if_present() (pygotm.fabm.engine.FABMEngine method) set_env_gotm_fabm() (in module pygotm.fabm.gotm_fabm) set_sst() (in module pygotm.airsea.airsea) set_ssuv() (in module pygotm.airsea.airsea) set_state() (pygotm.fabm.engine.FABMEngine method) settings (pygotm.config.GotmConfig attribute) settling_velocity_zanke() (in module pygotm.extras.sediment.sediment) shade_feedback (pygotm.fabm.config.FABMConfig attribute) shear() (in module pygotm.meanflow.shear) shear_KPP_exp (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_KPP_nu_zero (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_KPP_Ri_zero (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_mix_scheme (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_num_smooth_Ri (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_PP_alpha (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_PP_exp (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shear_PP_nu_zero (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) shortwave_radiation() (in module pygotm.airsea.shortwave_radiation) sig_e (pygotm.gotm.runtime_params.RuntimeParams attribute) sig_e0 (pygotm.gotm.runtime_params.RuntimeParams attribute) sig_eff (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) sig_k (pygotm.gotm.runtime_params.RuntimeParams attribute) sig_peps (pygotm.gotm.runtime_params.RuntimeParams attribute) sig_w (pygotm.gotm.runtime_params.RuntimeParams attribute) SIMPLE (pygotm.icethm.params.IceModelEnum attribute) simtime (pygotm.util.time.GotmTime attribute) size (pygotm.extras.sediment.sediment.SedimentState attribute) sl_var (pygotm.gotm.runtime_state.RuntimeState attribute) Sobs (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) solar_zenith_angle() (in module pygotm.airsea.solar_zenith_angle) source_dir (pygotm.config.GotmConfig property) source_path (pygotm.config.GotmConfig attribute) Sp (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) SPF (pygotm.gotm.runtime_state.RuntimeState attribute) Sprof (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) sprof_input (pygotm.observations.observations.ObservationsState attribute) sprof_input_active (pygotm.gotm.runtime_params.RuntimeParams attribute) sq_var (pygotm.gotm.runtime_state.RuntimeState attribute) SRelaxBott (pygotm.observations.observations.ObservationsState attribute) SRelaxSurf (pygotm.observations.observations.ObservationsState attribute) SRelaxTau (pygotm.observations.observations.ObservationsState attribute) SRelaxTauB (pygotm.observations.observations.ObservationsState attribute) SRelaxTauM (pygotm.observations.observations.ObservationsState attribute) SRelaxTauS (pygotm.observations.observations.ObservationsState attribute) SS (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.internal_wave.InternalWaveWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) SSCSTK (pygotm.gotm.runtime_state.RuntimeState attribute) sss (pygotm.gotm.runtime_output.RuntimeOutput attribute) sss_obs (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) SSSTK (pygotm.gotm.runtime_state.RuntimeState attribute) sst (pygotm.gotm.runtime_output.RuntimeOutput attribute) sst_obs (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) SSU (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) SSV (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) stab_method (pygotm.gotm.runtime_params.RuntimeParams attribute) start (pygotm.config.TimeSettings attribute) (pygotm.util.time.GotmTime attribute) start() (pygotm.fabm.engine.FABMEngine method) start_gotm_fabm() (in module pygotm.fabm.gotm_fabm) state (pygotm.fabm.engine.FABMEngine property) (pygotm.fabm.state.FABMStateBuffer attribute) (pygotm.gotm.runtime_builder.RuntimeBundle attribute) state_variable_names() (pygotm.fabm.engine.FABMEngine method) status (pygotm.execution.benchmark.BenchmarkResult attribute) (pygotm.validation.compare.VarResult attribute) step_alpha_mnb() (in module pygotm.turbulence.alpha_mnb) step_alpha_mnb_single() (in module pygotm.turbulence.alpha_mnb) step_basal_melt() (in module pygotm.icethm.models.basal_melt) step_cmue_c() (in module pygotm.turbulence.cmue_c) step_cmue_c_single() (in module pygotm.turbulence.cmue_c) step_cmue_d() (in module pygotm.turbulence.cmue_d) step_cmue_d_single() (in module pygotm.turbulence.cmue_d) step_coriolis_batch() (in module pygotm.meanflow.coriolis) step_coriolis_single() (in module pygotm.meanflow.coriolis) step_dissipationeq() (in module pygotm.turbulence.dissipationeq) step_dissipationeq_single() (in module pygotm.turbulence.dissipationeq) step_epsbalgebraic() (in module pygotm.turbulence.epsbalgebraic) step_epsbalgebraic_single() (in module pygotm.turbulence.epsbalgebraic) step_fabm_post_rates_single() (in module pygotm.fabm.gotm_fabm) step_fabm_transport_single() (in module pygotm.fabm.gotm_fabm) step_friction_batch() (in module pygotm.meanflow.friction) step_friction_single() (in module pygotm.meanflow.friction) step_ice() (in module pygotm.icethm.driver) step_internal_wave() (in module pygotm.turbulence.internal_wave) step_internal_wave_single() (in module pygotm.turbulence.internal_wave) step_kbalgebraic() (in module pygotm.turbulence.kbalgebraic) step_kbalgebraic_single() (in module pygotm.turbulence.kbalgebraic) step_lebedev() (in module pygotm.icethm.models.lebedev) step_mylake() (in module pygotm.icethm.models.mylake) step_omegaeq() (in module pygotm.turbulence.omegaeq) step_omegaeq_single() (in module pygotm.turbulence.omegaeq) step_production() (in module pygotm.turbulence.production) step_production_single() (in module pygotm.turbulence.production) step_salinity() (in module pygotm.meanflow.salinity) step_salinity_single() (in module pygotm.meanflow.salinity) step_shear_single() (in module pygotm.meanflow.shear) step_simple() (in module pygotm.icethm.models.simple) step_temperature() (in module pygotm.meanflow.temperature) step_temperature_single() (in module pygotm.meanflow.temperature) step_tkeeq() (in module pygotm.turbulence.tkeeq) step_tkeeq_single() (in module pygotm.turbulence.tkeeq) step_uequation() (in module pygotm.meanflow.uequation) step_uequation_single() (in module pygotm.meanflow.uequation) step_variances() (in module pygotm.turbulence.variances) step_variances_single() (in module pygotm.turbulence.variances) step_vequation() (in module pygotm.meanflow.vequation) step_vequation_single() (in module pygotm.meanflow.vequation) step_winton() (in module pygotm.icethm.models.winton) steps_per_s (pygotm.execution.benchmark.BenchmarkTimings attribute) stokes_active (pygotm.gotm.runtime_params.RuntimeParams attribute) stokes_drift_exp() (in module pygotm.stokes_drift.stokes_drift_exp) stokes_drift_exp_batch() (in module pygotm.stokes_drift.stokes_drift_exp) stokes_drift_theory() (in module pygotm.stokes_drift.stokes_drift_theory) stokes_drift_theory_batch() (in module pygotm.stokes_drift.stokes_drift_theory) stokes_drift_theory_srf() (in module pygotm.stokes_drift.stokes_drift_theory) stokes_srf (pygotm.stokes_drift.StokesDriftState attribute) StokesDriftState (class in pygotm.stokes_drift) stop (pygotm.config.TimeSettings attribute) (pygotm.util.time.GotmTime attribute) strip_case_plots() (in module pygotm.validation.runner) summary_case() (in module pygotm.validation.runner) sunrise_sunset() (in module pygotm.util.time) surface (pygotm.config.GotmSettings attribute) surface_drag_feedback (pygotm.fabm.config.FABMConfig attribute) surface_fluxes() (in module pygotm.airsea.airsea) surface_ice_energy (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) surface_layer() (in module pygotm.cvmix.gotm_cvmix) swr (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) T T (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) T0 (pygotm.gotm.runtime_params.RuntimeParams attribute) T1 (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) T2 (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) t_1 (pygotm.observations.observations.ObservationsState attribute) t_2 (pygotm.observations.observations.ObservationsState attribute) t_adv (pygotm.config.IntPressureSettings attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) T_melt (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) t_obs_NN (pygotm.observations.observations.ObservationsState attribute) t_relax_tau (pygotm.gotm.runtime_work.RuntimeWork attribute) take_mean (pygotm.extras.sediment.sediment.SedimentState attribute) task_name (pygotm.validation.reference.ValidationCase property) tau (pygotm.config.ProfileRelaxationSettings attribute) tau_b (pygotm.config.ProfileRelaxationSettings attribute) tau_s (pygotm.config.ProfileRelaxationSettings attribute) taub (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) taux (pygotm.gotm.runtime_output.RuntimeOutput attribute) tauy (pygotm.gotm.runtime_output.RuntimeOutput attribute) temperature (pygotm.config.GotmSettings attribute) temperature() (in module pygotm.meanflow.temperature) TemperatureSettings (class in pygotm.config) Tf (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) theta_WL (pygotm.stokes_drift.StokesDriftState attribute) theta_WW (pygotm.stokes_drift.StokesDriftState attribute) Ti (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) Tice_surface (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) tidal (pygotm.config.ScalarTidalSettings attribute) TidalConstituentSettings (class in pygotm.config) time (pygotm.config.GotmSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) time_diff() (in module pygotm.util.time) time_loop_compiled() (in module pygotm.gotm.time_loop) timefmt (pygotm.util.time.GotmTime attribute) TimeLoopRunner (class in pygotm.gotm.runtime_builder) TimeSettings (class in pygotm.config) timestep (pygotm.util.time.GotmTime attribute) timestr (pygotm.util.time.GotmTime attribute) timings (pygotm.execution.benchmark.BenchmarkResult attribute) title (pygotm.config.GotmSettings attribute) tke (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.epsbalgebraic.EpsBAlgebraicWorkspace attribute) (pygotm.turbulence.internal_wave.InternalWaveWorkspace attribute) (pygotm.turbulence.kbalgebraic.KBAlgebraicWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) tke_method (pygotm.gotm.runtime_params.RuntimeParams attribute) TKEEquationWorkspace (class in pygotm.turbulence.tkeeq) tkeo (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) Tobs (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) total_s (pygotm.execution.benchmark.BenchmarkTimings attribute) Tp (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) Tprof (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) tprof_input (pygotm.observations.observations.ObservationsState attribute) tprof_input_active (pygotm.gotm.runtime_params.RuntimeParams attribute) transmissivity (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.icethm.state.IceState attribute) TRelaxBott (pygotm.observations.observations.ObservationsState attribute) TRelaxSurf (pygotm.observations.observations.ObservationsState attribute) TRelaxTau (pygotm.observations.observations.ObservationsState attribute) TRelaxTauB (pygotm.observations.observations.ObservationsState attribute) TRelaxTauM (pygotm.observations.observations.ObservationsState attribute) TRelaxTauS (pygotm.observations.observations.ObservationsState attribute) tridiagonal() (in module pygotm.util.tridiagonal) TridiagonalBatchWorkspace (class in pygotm.util.tridiagonal) TridiagonalWorkspace (class in pygotm.util.tridiagonal) turb_method (pygotm.gotm.runtime_params.RuntimeParams attribute) turbulence (pygotm.config.GotmSettings attribute) two_layer (pygotm.config.SalinitySettings attribute) (pygotm.config.TemperatureSettings attribute) tx (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) ty (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) type (pygotm.config.ExtPressureSettings attribute) (pygotm.config.IntPressureSettings attribute) (pygotm.config.PlumeSettings attribute) (pygotm.config.SalinitySettings attribute) (pygotm.config.TemperatureSettings attribute) Tz (pygotm.config.WaveSettings attribute) Tz_input (pygotm.observations.observations.ObservationsState attribute) U u (pygotm.config.VelocitySettings attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) u10 (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) u_obs (pygotm.gotm.runtime_output.RuntimeOutput attribute) u_taub (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) u_taubo (pygotm.gotm.runtime_state.RuntimeState attribute) u_taus (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) ubc_type (pygotm.gotm.runtime_params.RuntimeParams attribute) uequation() (in module pygotm.meanflow.uequation) units (pygotm.fabm.engine.FABMOutputSpec attribute) unresolved_dependencies() (pygotm.fabm.engine.FABMEngine method) UnsupportedConfigurationError uo (pygotm.gotm.runtime_state.RuntimeState attribute) update_time() (pygotm.util.time.GotmTime method) uprof (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) uprof_input (pygotm.observations.observations.ObservationsState attribute) uprof_input_active (pygotm.gotm.runtime_params.RuntimeParams attribute) us (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) us0 (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.stokes_drift.StokesDriftState attribute) us0_input (pygotm.stokes_drift.StokesDriftState attribute) us0_method (pygotm.stokes_drift.StokesDriftState attribute) use (pygotm.fabm.config.FABMConfig attribute) use_background (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_bottom_layer (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_convection (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_double_diffusion (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_interior (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_shear (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_surface_layer (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) use_tidal_mixing (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) usprof (pygotm.stokes_drift.StokesDriftState attribute) usprof_input (pygotm.stokes_drift.StokesDriftState attribute) usprof_method (pygotm.stokes_drift.StokesDriftState attribute) ustarc (pygotm.extras.sediment.sediment.SedimentState attribute) uu (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) uwnd (pygotm.stokes_drift.StokesDriftState attribute) uwnd_input (pygotm.stokes_drift.StokesDriftState attribute) uwnd_method (pygotm.stokes_drift.StokesDriftState attribute) V v (pygotm.config.VelocitySettings attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) v10 (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) v_obs (pygotm.gotm.runtime_output.RuntimeOutput attribute) validate() (pygotm.fabm.state.FABMStateBuffer method) (pygotm.gotm.runtime_forcing.RuntimeForcing method) (pygotm.gotm.runtime_output.RuntimeOutput method) (pygotm.gotm.runtime_state.RuntimeState method) (pygotm.gotm.runtime_work.RuntimeWork method) validate_case() (in module pygotm.validation.runner) validate_case_to_html() (in module pygotm.validation.runner) ValidationCase (class in pygotm.validation.reference) ValidationError value (pygotm.input.input.ScalarInput attribute) variable_id (pygotm.fabm.gotm_fabm.FabmObservation attribute) variable_names (pygotm.fabm.state.FABMStateBuffer attribute) variables (pygotm.fabm.gotm_fabm_input.FabmInputState attribute) VariancesWorkspace (class in pygotm.turbulence.variances) VarResult (class in pygotm.validation.compare) vel_relax_ramp (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) vel_relax_tau (pygotm.gotm.runtime_work.RuntimeWork attribute) (pygotm.observations.observations.ObservationsState attribute) vel_relax_tau_eff (pygotm.gotm.runtime_work.RuntimeWork attribute) velocities (pygotm.config.GotmSettings attribute) VelocitySettings (class in pygotm.config) vequation() (in module pygotm.meanflow.vequation) version (pygotm.config.GotmSettings attribute) VerticalVelocitySettings (class in pygotm.config) vfric (pygotm.extras.seagrass.seagrass.SeagrassState attribute) vo (pygotm.gotm.runtime_state.RuntimeState attribute) vprof (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_work.RuntimeWork attribute) vprof_input (pygotm.observations.observations.ObservationsState attribute) vprof_input_active (pygotm.gotm.runtime_params.RuntimeParams attribute) vs (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) vs0 (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.stokes_drift.StokesDriftState attribute) vs0_input (pygotm.stokes_drift.StokesDriftState attribute) vs0_method (pygotm.stokes_drift.StokesDriftState attribute) vsprof (pygotm.stokes_drift.StokesDriftState attribute) vsprof_input (pygotm.stokes_drift.StokesDriftState attribute) vsprof_method (pygotm.stokes_drift.StokesDriftState attribute) vv (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) vwnd (pygotm.stokes_drift.StokesDriftState attribute) vwnd_input (pygotm.stokes_drift.StokesDriftState attribute) vwnd_method (pygotm.stokes_drift.StokesDriftState attribute) W w (pygotm.config.GotmSettings attribute) (pygotm.config.Mimic3DSettings attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) w_adv (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) w_adv_active (pygotm.gotm.runtime_params.RuntimeParams attribute) w_adv_discr (pygotm.gotm.runtime_params.RuntimeParams attribute) (pygotm.observations.observations.ObservationsState attribute) w_adv_input (pygotm.observations.observations.ObservationsState attribute) w_height (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) w_height_input (pygotm.observations.observations.ObservationsState attribute) warmup_couette_step_routines() (in module pygotm.gotm.time_loop) warmup_s (pygotm.execution.benchmark.BenchmarkTimings attribute) waves (pygotm.config.GotmSettings attribute) WaveSettings (class in pygotm.config) wc (pygotm.extras.sediment.sediment.SedimentState attribute) WINTON (pygotm.icethm.params.IceModelEnum attribute) work (pygotm.gotm.runtime_builder.RuntimeBundle attribute) write_dataset() (pygotm.driver.GotmDriver static method) write_time_string() (in module pygotm.util.time) ww (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.variances.VariancesWorkspace attribute) X x_slope (pygotm.config.PlumeSettings attribute) xP (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) xRf (pygotm.gotm.runtime_state.RuntimeState attribute) xx (pygotm.extras.seagrass.seagrass.SeagrassState attribute) xxP (pygotm.extras.seagrass.seagrass.SeagrassState attribute) Y y_slope (pygotm.config.PlumeSettings attribute) yaml_base (pygotm.validation.reference.ValidationCase property) yaml_path (pygotm.validation.reference.ValidationCase attribute) yearday (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.util.time.GotmTime attribute) yy (pygotm.extras.seagrass.seagrass.SeagrassState attribute) Z z (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) z0b (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) z0b_method (pygotm.extras.sediment.sediment.SedimentState attribute) z0s (pygotm.gotm.runtime_state.RuntimeState attribute) (pygotm.turbulence.dissipationeq.DissipationEquationWorkspace attribute) (pygotm.turbulence.omegaeq.OmegaEquationWorkspace attribute) (pygotm.turbulence.tkeeq.TKEEquationWorkspace attribute) z0s_min (pygotm.gotm.runtime_params.RuntimeParams attribute) z_r (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) z_s1 (pygotm.observations.observations.ObservationsState attribute) z_s2 (pygotm.observations.observations.ObservationsState attribute) z_t1 (pygotm.observations.observations.ObservationsState attribute) z_t2 (pygotm.observations.observations.ObservationsState attribute) z_w (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) za (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) zbbl (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute) zeta (pygotm.config.Mimic3DSettings attribute) (pygotm.gotm.runtime_forcing.RuntimeForcing attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) zeta_input (pygotm.observations.observations.ObservationsState attribute) zeta_input_active (pygotm.gotm.runtime_params.RuntimeParams attribute) zi (pygotm.extras.sediment.sediment.SedimentState attribute) (pygotm.gotm.runtime_output.RuntimeOutput attribute) (pygotm.gotm.runtime_state.RuntimeState attribute) zp (pygotm.extras.sediment.sediment.SedimentState attribute) zsbl (pygotm.cvmix.CVMixState attribute) (pygotm.cvmix.gotm_cvmix.CVMixState attribute)